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Publikationen

2013

Maunz, A, Gütlein, M, Rautenberg, M, Vorgrimmler, D, Gebele, D, and Helma, C (2013).
lazar: a modular predictive toxicology framework
Frontiers in Predictive Toxicology.

Kaiser, J, Meister, D, Gottfried, V, and Brinkmann, A (2013).
Overcoming the Data Download Bottleneck in Data Centers
In: Proceedings of the 8th IEEE International Conference on Networking, Architecture, and Storage (NAS), Hainan, China.

Herres-Pawlis, S, Balasko, A, Birkenheuer, G, Brinkmann, A, Gesing, S, Grunzke, R, Hoffmann, A, Kacsuk, P, Krüger, J, Packschies, L, Terstyansky, G, and Weingarten, N (2013).
User-friendly workflows in quantum chemistry
In: Proceedings of the International Workshop on Science Gateways (IWSG), Zürich.

Doenigus, D, Endler, S, Fischlin, M, Huelsing, A, Jaeger, P, Lehmann, A, Podrazhansky, S, Schipp, S, Tews, E, Vowe, S, Walthart, M, and Weidemann, F (2007).
Security of Invertible Media Authentication Schemes Revisited
In: Information Hiding 2007, vol. 4567, pp. 189-203, Springer-Verlag.

Schmidt, J, Hapfelmeier, A, Ghorbani, A, and Kramer, S (2013).
Learning Probabilistic Real-Time Automata from Multi-Attribute Event Logs
Intelligent Data Analysis Special Issue on Dynak Topics, 7(1):to appear.

Seeland, M, Kramer, S, and Pfahringer, B (2013).
Model Selection Based Product Kernel Learning for Regression on Graphs
In: Proceedings of the 28th Symposium On Applied Computing, ACM.

Meister, D, Brinkmann, A, and Süß, T (2013).
File Recipe Compression in Data Deduplication Systems
In: Proceedings of the 11th USENIX Conference on File and Storage Technologies (FAST), San Jose, CA, USA.

Berenbrink, P, Brinkmann, A, Friedetzky, T, Meister, D, and Nagel, L (2013).
Distributing Storage in Cloud Environments
In: Proceedings of the High-Performance Grid and Cloud Computing Workshop (HPGC), Boston, Massachusetts, USA.

Dehof, AK, Loew, S, Lenhof, H, and Hildebrandt, A (2013).
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinformatics, 14(1):98.

Endler, S, Langen, H, Perl, J, Stäudt, M, and Tokarski, H (2013).
Trainingssteuerung im Ausdauerbereich – eine Arbeitshilfe für Schulen –
Booklet, Broschüre für Schulen.

2012

Althaus, E, Hoffmann, S, Kupilas, J, and Thaden, E (2012).
A Column Generation Approach to Scheduling of Real-Time Networks
In: Proceedings of the World Congress on Engineering and Computer Science (WCECS), vol. 1, pp. 224–229, IAENG, San Francisco, USA, IAENG (ISBN: 978-988-19251-6-9).

Grunzke, R, Birkenheuer, G, Blunk, D, Breuers, S, Brinkmann, A, Gesing, S, Herres-Pawlis, S, Kohlbacher, O, Krüger, J, Kruse, M, Müller-Pfefferkorn, R, Schäfer, P, Schuller, B, Steinke, T, and Zink, A (2012).
A Data Driven Science Gateway for Computational Workflows
In: Proceedings of the UNICORE Summit 2012, Dresden, Germany.

Benz, F, Hildebrandt, A, and Hack, S (2012).
A Dynamic Program Analysis to find Floating-Point Accuracy Problems
In: PLDI '12: Proceedings of the 2012 ACM SIGPLAN Conference on Programming Language Design and Implementation.

Gesing, S, Herres-Pawlis, S, Birkenheuer, G, Brinkmann, A, Grunzke, R, Kacsuk, P, Kohlbacher, O, Kozlovszky, M, Krüger, J, Müller-Pfefferkorn, R, Schäfer, P, and Steinke, T (2012).
A Science Gateway Getting Ready for Serving the International Molecular Simulation Community
Proceedings of Science - EGICF12-EMITC2.

Gesing, S, Grunzke, R, Krüger, J, Birkenheuer, G, Wewior, M, Schäfer, P, Schuller, B, Schuster, J, Herres-Pawlis, S, Breuers, S, Balaskó, �, Kozlovszky, M, Fabri, AS, Packschies, L, Kacsuk, P, Blunk, D, Steinke, T, Brinkmann, A, Fels, G, Müller-Pfefferkorn, R, Jäkel, R, and Kohlbacher, O (2012).
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics
Journal of Grid Computing, 10:769-790.

Seeland, M, Karwath, A, and Kramer, S (2012).
A Structural Cluster Kernel for Learning on Graphs
In: Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, accepted.

Meister, D, Kaiser, J, Brinkmann, A, Kuhn, M, Kunkel, J, and Cortes, T (2012).
A Study on Data Deduplication in HPC Storage Systems
In: Proceedings of the ACM/IEEE Conference on High Performance Computing (SC), Salt Lake City, Utah, USA.

Grzonka, S, Karwath, A, Dijoux, F, and Burgard, W (2012).
Activity-Based Estimation of Human Trajectories
IEEE Transactions on Robotics, 28(1):234–245.

Dangelmaier, W, Fischer, M, Huber, D, Laroque, C, and Süß, T (2008).
Aggregated 3D-Visualization of a Distributed Simulation Experiment of a Queuing System
In: Winter Simulation Conference (WSC´ 08) , ed. by Mason, S. J. and Hill, R. and Moench, L. and Rose, O. , pp. 2012 - 2020, IEEE, Omnipress.

Schlitt, S, Gorelik, TE, Stewart, AA, Schömer, E, Raasch, T, and Kolb, U (2012).
Application of clustering techniques to electron-diffraction data: determination of unit-cell parameters
Acta Crystallographica Section A, 68(5):536–546.

Süß, T, Koch, C, Jähn, C, Fischer, M, and Meyer auf der Heide, F (2012).
Asynchronous Occlusion Culling on Heterogeneous PC Clusters for Distributed 3D Scenes
In: Advances in Visual Computing, vol. 7431, pp. 502-512, Springer Berlin Heidelberg. Lecture Notes in Computer Science. (ISBN: 978-3-642-33178-7).

Groß, D, Heil, U, Schulze, R, Schömer, E, and Schwanecke, U (2012).
Auto calibration of a cone-beam-CT
Medical Physics, 39(10):5959-5970.

Berenbrink, P, Brinkmann, A, Friedetzky, T, and Nagel, L (2012).
Balls into bins with related random choices
J. Parallel Distrib. Comput., 72(2):246-253.

Althaus, E and Dumitriu, D (2012).
Certifying Feasibility and Objective Value of Linear Programs
Operations Research Letters.

Gütlein, M, Karwath, A, and Kramer, S (2012).
CheS-Mapper – Chemical Space Mapping and Visualization in 3D
Journal of Cheminformatics, 4(7).

Mehr…

2011

Li, R, Hapfelmeier, A, Schmidt, J, Perneczky, R, Drzezga, A, Kurz, A, and Kramer, S (2011).
A case study of stacked multi-view learning in dementia research
In: Proceedings of the 13th Conference on Artificial Intelligence in Medicine, pp. 60–69, Berlin, Heidelberg, Springer-Verlag. LNCS.

Hemmer, M, Dupont, L, Petitjean, S, and Schömer, E (2011).
A complete, exact and efficient implementation for computing the edge-adjacency graph of an arrangement of quadrics
Journal of Symbolic Computation, 46(4):467 - 494.

Bardhan, JP and Hildebrandt, A (2011).
A Fast Solver for Nonlocal Electrostatic Theory in Biomolecular Science and Engineering
In: Design Automation Conference (DAC), 2011 48th ACM/EDAC/IEEE.

Alphonse, E, Girschick, T, Buchwald, F, and Kramer, S (2011).
A Numerical Refinement Operator based on Multi-Instance Learning
In: Inductive Logic Programming - 20th International Conference, ILP 2010, ed. by Paolo Frasconi and Francesca A. Lisi, vol. 6489, pp. 14-21, Springer. LNCS/LNAI.

Böck, M, Schmitt, C, and Kramer, S (2011).
A Study of Dynamic Time Warping for the Inference of Gene Regulatory Relationships
In: Proceedings of the Fifth International Workshop on Machine Learning in Systems Biology (MLSB11), ed. by S. Kramer and N. Lawrence.

Böck, M, Schmitt, C, and Kramer, S (2011).
A Study of Dynamic Time Warping for the Inference of Gene Regulatory Relationships
In: Proceedings of the German Conference on Bioinformatics (GCB11).

Rey, JW, Schreiner, O, Barreiros, AP, Heise, M, Krupp, M, Schuchmann, M, Otto, G, Galle, PR, and Teufel, A (2011).
Acute renal failure and liver dysfunction after subcutaneous injection of 3-sn-phosphatidylcholine (Lipostabil®)-case report.
Z Gastroenterol, 49:340-343.

Niehörster, O, Keller, A, and Brinkmann, A (2011).
An Energy-Aware SaaS Stack
In: Proceedings of the 19th Annual IEEE/ACM International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS), pp. 450-453, Singapore (ISBN: 978-1-4577-0468-0).

Süß, T, Koch, C, Jähn, C, and Fischer, M (2011).
Approximative occlusion culling using the hull tree
In: Proceedings of Graphics Interface 2011 , pp. 79-86, Canadian Human-Computer Communications Society .

Schulze, R, Heil, U, Groß, D, Brüllmann, DD, Dranischnikow, E, Schwanecke, U, and Schömer, E (2011).
Artefacts in CBCT: a review
Dentomaxillofacial Radiology, 40(5):265 - 273.

Dehof, AK, Rurainski, A, Bui, QB, Böcker, S, Lenhof, H, and Hildebrandt, A (2011).
Automated bond order assignment as an optimization problem
Bioinformatics, 27(5):619-625.

Niehörster, O and Brinkmann, A (2011).
Autonomic Resource Management Handling Delayed Configuration Effects
In: Proceedings of the 3rd IEEE International Conference on Cloud Computing Technology and Science (CloudCom), pp. 138-145, Athens, Greece (ISBN: 978-1-4673-0090-2).

Niehörster, O, Krieger, A, Simon, J, and Brinkmann, A (2011).
Autonomic Resource Management with Support Vector Machines
In: Proceedings of the 12th IEEE/ACM International Conference on Grid Computing (GRID), pp. 157-164, Lyon, France (ISBN: 978-1-4577-1904-2).

Schmidt, J, Brändle, EM, and Kramer, S (2011).
Clustering with Attribute-Level Constraints
In: 11th IEEE International Conference on Data Mining (ICDM), ed. by Diane J. Cook and Jian Pei and Wei Wang and Osmar R. Zaiane and Xindong Wu, pp. 1206-1211, IEEE.

Perl, J (2011).
Concepts and Methods of Modelling. A Case Study
In: Proceedings of the 8th International Symposium on Computer Science in Sport, ed. by Jiang and Zhang, pp. 10-21.

Beisel, T, Wiersema, T, Plessl, C, and Brinkmann, A (2011).
Cooperative multitasking for heterogeneous accelerators in the Linux Completely Fair Scheduler
In: 22nd IEEE International Conference on Application-specific Systems, Architectures and Processors (ASAP), pp. 223-226, Santa Monica, CA, USA (ISBN: 978-1-4577-1291-3).

Keller, M, Kovacs, J, and Brinkmann, A (2011).
Desktop Grids Opening up to UNICORE
In: Proceedings of the UNICORE Summit 2011, pp. 67-76, Torun, Poland (ISBN: 978-3-89336-750-4).

Maunz, A, Helma, C, and Kramer, S (2011).
Efficient mining for structurally diverse subgraph patterns in large molecular databases
In: Machine Learning, vol. 83(2), pp. 193-218, Springer Netherlands.

Endler, S, Pietzonka, M, Pfeiffer, M, Reim, D, and Perl, J (2011).
Ein Methodenvergleich zwischen laktatbasierten Schwellenkonzepten und informatischem Modell
In: Kreativität – Innovation – Leistung, ed. by Hottenrott, Stoll and Wollny, pp. 127.

Süß, T, Jähn, C, Fischer, M, Meyer auf der Heide, F, and Koch, C (2011).
Ein paralleles Out-of-Core Renderingsystem für Standard-Rechnernetze
In: Augmented & Virtual Reality in der Produktentstehung , ed. by Gausemeier, Jürgen and Grafe, Michael and Meyer auf der Heide, Friedhelm , vol. 295, pp. 185-197, Heinz Nixdorf Institut, Universität Paderborn.

Keller, M, Meister, D, Brinkmann, A, Terboven, C, and Bischof, CH (2011).
eScience Cloud Infrastructure
In: Proceedings of the 37th EUROMICRO Conference on Software Engineering and Advanced Applications (EUROMICRO-SEAA), pp. 188-195, Oulu, Finland (ISBN: 978-1-4577-1027-8).

Grawinkel, M, Schäfer, T, Brinkmann, A, Hagemeyer, J, and Porrmann, M (2011).
Evaluation of Applied Intra-Disk Redundancy Schemes to Improve Single Disk Reliability
In: Proceedings of the 19th Annual Meeting of the IEEE International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication Systems (MASCOTS).

Berenbrink, P, Elsässer, R, Friedetzky, T, Nagel, L, and Sauerwald, T (2011).
Faster Coupon Collecting via Replication with Applications in Gossiping
In: MFCS, pp. 72-83.

Schmidt, A, Memmert, D, and Perl, J (2011).
Fertigkeitsanalyse durch Mustererkennung mittels Künstlicher Neuronaler Netze
In: Sportinformatik trifft Sporttechnologie, ed. by Link and Wiemeyer, pp. 116-120.

Martin, L (2011).
Filtering Usability Data with Reference to Behavior
In: International Workshop on DETecting and Exploiting Cultural diversiTy on the Social Web, pp. 23-28.

Schumacher, T, Süß, T, Plessl, C, and Platzner, M (2011).
FPGA Acceleration of Communication-Bound Streaming Applications: Architecture Modeling and a 3D Image Compositing Case Study
International Journal of Reconfigurable Computing, 2011:1-11.

Gesing, S, Grunzke, R, Balasko, A, Birkenheuer, G, Blunk, D, Breuers, S, Brinkmann, A, Fels, G, Herres-Pawlis, S, Kacsuk, P, Kozlovszky, M, Krüger, J, Packschies, L, Schäfers, P, Schuller, B, Schuster, J, Steinke, T, Fabri, AS, Wewior, M, Müller-Pfefferkorn, R, and Kohlbacher, O (2011).
Granular Security for a Science Gateway in Structural Bioinformatics
In: Proceedings of the International Workshop on Scientific Gateways 2011 (IWSG), pp. 44-48, London, UK.

von Dziegielewski, A, Hemmer, M, and Schömer, E (2011).
High Quality Surface Mesh Generation for Swept Volumes
In: EuroCG Workshop on Computational Geometry.

Hamp, T, Birzele, F, Buchwald, F, and Kramer, S (2011).
Improving Structure Alignment Based Prediction of SCOP Families Using Vorolign Kernels
Bioinformatics, 27(2):204-210.

Schmidt, J, Hapfelmeier, A, Schmidt, W, and Wollina, U (2011).
Improving Wound Score Classification with Limited Remission Spectra
International Wound Journal, Wiley-Blackwell.

Birkenheuer, G, Brinkmann, A, Högqvist, M, Papaspyrou, A, Schott, B, Sommerfeld, D, and Ziegler, W (2011).
Infrastructure Federation Through Virtualized Delegation of Resources and Services - DGSI: Adding Interoperability to DCI Meta Schedulers
Journal of Grid Computing, 9(3):355-377.

Althaus, E, Becker, B, Dumitriu, D, and Kupferschmid, S (2011).
Integration of an LP Solver into Interval Constraint Propagation
In: Proc. 5th International Conference on Combinatorial Optimization and Applications (COCOA '11), ed. by Wang, Weifan and Zhu, Xuding and Du, Ding-Zhu, vol. 6831, pp. 343-356, Springer. LNCS (ISBN: 978-3-642-22615-1).

Geilke, M and Zilles, S (2011).
Learning Relational Patterns
In: Proceedings of the 22nd International Conference on Algorithmic Learning Theory, pp. 84-98.

Endler, S and Perl, J (2011).
Leistungsoptimierung beim Marathon mit sportinformatischen Modellen
In: Sportinformatik trifft Sporttechnologie, ed. by Link and Wiemeyer, pp. 221-225.

Grawinkel, M, Pargmann, M, Dömer, H, and Brinkmann, A (2011).
Lonestar: An Energy-Aware Disk Based Long-Term Archival Storage System
In: Proceedings of the 17th IEEE International Conference on Parallel and Distributed Systems (ICPADS).

Giraud, M, Schmidt, B, Janot, S, and Varre, JS (2011).
M. Giraud, B. Schmidt, S. Janot, J.S. Varre: Many-core high-performance computing in Bioinformatics
In: Advances in Genomic Sequence Analysis and Pattern Discovery, ed. by Laura Elnitski, Helen Piontkivska, Lonnie R Welch. World Scientific, chap. 8, pp. 179-208.

Giraud, M, Schmidt, B, Janot, S, and Varre, JS (2011).
M. Giraud, B. Schmidt, S. Janot, J.S. Varre: Many-core high-performance computing in Bioinformatics
In: Advances in Genomic Sequence Analysis and Pattern Discovery, ed. by Laura Elnitski, Helen Piontkivska, Lonnie R Welch. World Scientific, chap. 8, pp. 179-208.

Heil, U, Gross, D, Schulze, R, Schwanecke, U, and Schömer, E (2011).
Metal artifact reduction in x-ray computed tomography: Inpainting versus missing value
In: Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2011 IEEE, pp. 2675 - 2677 (ISBN: 978-1-4673-0118-3).

Birkenheuer, G, Blunk, D, Breuers, S, Brinkmann, A, Fels, G, Gesing, S, Grunzke, R, Herres-Pawlis, S, Kohlbacher, O, Krüger, J, Lang, U, Packschies, L, Müller-Pfefferkorn, R, Schäfer, P, Schuster, J, Steinke, T, Warzecha, K, and Wewior, M (2011).
MoSGrid: Progress of Workflow driven Chemical Simulations
In: Proceedings of the Grid Workflow Workshop (GWW).

Perl, J and Memmert, D (2011).
Net-Based Game Analysis by Means of the Software Tool SOCCER
International Journal of Computer Science in Sport, 10(2):77-84.

Grunz, A, Endler, S, Memmert, D, and Perl, J (2011).
Netz-gestützte Konstellations-Analyse im Fußball
In: Sportinformatik trifft Sporttechnologie, ed. by Link and Wiemeyer, pp. 111-115.

Althaus, E, Kupilas, J, and Naujoks, R (2011).
On the Low-Dimensional Steiner Minimum Tree Problem in Hamming Metric
In: Theory and Applications of Models of Computation, ed. by Ogihara, Mitsunori and Tarui, Jun, vol. 6648, pp. 308-319, Springer Berlin / Heidelberg. Lecture Notes in Computer Science.

Metzen, J, Kim, S, Duchrow, T, Kirchner, E, and Kirchner, F (2011).
On Transferring Spatial Filters in a Brain Reading Scenario
In: Statistical Signal Processing Workshop (SSP), 2011 IEEE, pp. 797–800, IEEE.

Süß, T (2011).
Parallel real-time rendering using heterogeneous PC clusters
PhD thesis, University of Paderborn, Germany.

Seeland, M, Berger, SA, Stamatakis, A, and Kramer, S (2011).
Parallel Structural Graph Clustering
In: Proceedings of the 2011 European Conference on Machine Learning and Knowledge Discovery in Databases: Part III, pp. 256–272. ECML PKDD 2011.

Perl, J and Pfeiffer, M (2011).
PerPot DoMo: Antagonistic meta-model processing two concurrent load flows
International Journal of Computer Science in Sport, 10(2):85-92.

Buchwald, F, Richter, L, and Kramer, S (2011).
Predicting a small molecule-kinase interaction map: A machine learning approach
Journal of Cheminformatics, 3:22.

Gottron, T and Martin, L (2011).
Readability and the Web
In: ITA11: Proceedings of the 4th International Conference on Internet Technologies and Applications, pp. 78-85.

Miranda, A, Effert, S, Kang, Y, Miller, EL, Brinkmann, A, and Cortes, T (2011).
Reliable and randomized data distribution strategies for large scale storage systems
In: Proceedings of the 18th International Conference on High Performance Computing (HiPC), Bengaluru, India (ISBN: 978-1-4577-1951-6).

Brinkmann, A, Gao, Y, Korzeniowski, M, and Meister, D (2011).
Request Load Balancing for Highly Skewed Traffic in P2P Networks
In: Proceedings of the Sixth International Conference on Networking, Architecture, and Storage (NAS), pp. 53-62, Dalian, China (ISBN: 978-1-4577-1172-5).

Mehr…