Stefan Kramer, Prof. Dr.

Head of Information Systems

Room: 03-617

Johannes Gutenberg - Universität Mainz
Institut für Informatik
Staudingerweg 9
55128 Mainz, Germany

E-Mail: kramer@informatik.uni-mainz.de

Office Phone: +49-6131-39-23378 or -26990
Fax number: +49-6131-39-23534

Awards:

Best Application Paper Runner-Up, Seventh ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD-2001) (for: Kramer S., De Raedt L., Helma C.: Molecular Feature Mining in HIV Data)
Best Theory Paper, 16th International Conference on Inductive Logic Programming (ILP-2006) (for: Rückert U., Kramer S.: Margin-Based First-Order Rule Learning)
Best Application Paper, 8th IEEE International Conference on Data Mining (ICDM-2008) (for: Hapfelmeier A., Schmidt J., Mueller M., Drzezga A., Perneczky R., Kurz A., Kramer S.: Interpreting PET Scans by Structured
Patient Data: A Data Mining Case Study in Dementia Research)

Activities:

Program Chair of Innovation in Predictive Toxicology: OpenTox InterAction Meeting 2011, Munich, Germany, August 9-12, 2011.
Program Chair of Fifth International Workshop on Machine Learning in Systems Biology (MLSB-2011), Vienna, Austria, July 20-21, 2011.
Program Chair of the First International Workshop on the Induction of Process Models (IPM-2007) at the 24th International Conference on Machine Learning (ICML-2007), Corvallis, OR, 2007.

Program Chair of the Second International Workshop on the Induction of Process Models (IPM-2008) at the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML/PKDD 2008)
Program Chair of the Fifteenth International Conference on Inductive Logic Programming (ILP-2005), Bonn, Germany, August 10-13, 2005.
Tutorial and Workshop Chair of the 14th European Conference on Machine Learning (ECML-2003)/7th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD-2003)
Program Co-Chair of the Workshop "Attribute-Value and Relational Learning: Crossing the Boundaries" at the Seventeenth International Conference on Machine Learning (ICML-2000), Stanford University, June 29-July 2, 2000.
Program Co-Chair of the Workshop "The Predictive Toxicology Challenge 2000-2001" at the Fifth European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD-2001), Albert-Ludwigs-University Freiburg, Germany, September 6, 2001.
Area Chair at the 18th European Conference on Machine Learning (ECML-2007)/11th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD-2007)
Area Chair at the 17th European Conference on Machine Learning (ECML-2006)/10th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD-2006)
Session Chair Applications of Machine Learning and Graph Mining in Drug Discovery at eCheminfo InterAction Meeting, Basel, Switzerland, November 10, 2005.
Co-Organizer of the Predictive Toxicology Challenge 2000-2001, the sequel to the Predictive Toxicology Evaluation Challenge
Co-Editor of a special section in Bioinformatics on the Predictive Toxicology Challenge 2000-2001
Co-Editor of a special issue of Machine Learning on Multi-Relational Data Mining and Statistical Relational Learning (2005/2006)
Co-Organizer of the German Conference on Bioinformatics GCB-2003
Local Co-Chair of the 12th European Conference on Machine Learning (ECML-2001)/5th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD-2001), Albert-Ludwigs-University Freiburg, Germany, September 2001

Publications:

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Girschick, T, Buchwald, F, Hardy, B, and Kramer, S (2010).
OpenTox: A Distributed REST Approach to Predictive Toxicology
In: Proceedings of the 3rd Workshop on Third-Generation Data Mining: Towards Service-Oriented Knowledge Discovery (SoKD’10) at the European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases 2010, ed. by Melanie Hilario, Nada Lavrač, Vid Podpečan, Joost N. Kok, pp. 61-62.

Hardy, B, Douglas, N, Helma, C, Rautenberg, M, Jeliazkova, N, Jeliazkov, V, Nikolova, I, Benigni, R, Tcheremenskaia, O, Kramer, S, Girschick, T, Buchwald, F, Wicker, J, Karwath, A, Gütlein, M, Maunz, A, Sarimveis, H, Melagraki, G, Afantitis, A, Sopasakis, P, Gallagher, D, Poroikov, V, Filimonov, D, Zakharov, A, Langunin, A, Gloriozova, T, Novikov, S, Skvortsova, N, Druzhilovsky, D, Chawla, S, Gosh, I, Ray, S, Patel, H, and Escher, S (2010).
Collaborative Development of Predictive Toxicology Applications
Journal of Cheminformatics, 2(7).

Hopf, T and Kramer, S (2010).
Mining Class-Correlated Patterns for Sequence Labeling
In: Proceedings of the 13th International Conference on Discovery Science, Springer.

Maunz, A, Helma, C, Cramer, T, and Kramer, S (2010).
Latent Structure Pattern Mining
In: Balcazar, Jose; Bonchi,Francesco; Gionis, Aristides; Sebag, Michele: ECML/PKDD 2010: Machine Learning and Knowledge Discovery in Databases, vol. 6322, pp. 353-368, Berlin / Heidelberg, Springer.

Müller, M and Kramer, S (2010).
Integer Linear Programming Models for Constrained Clustering
In: Proceedings of the 13th International Discovery Science DS 2010, ed. by Bernhard Pfahringer, Geoffrey Holmes and Achim Hoffman, pp. 159-173, Springer.

Rückert, U, Girschick, T, Buchwald, F, and Kramer, S (2010).
Adapted Transfer of Distance Measures for Quantitative Structure-Activity Relationships
In: Proceedings of the 13th International Conference on Discovery Science, ed. by B. Pfahringer, G. Holmes, A. Hoffman, vol. 6332, pp. 341-355, Springer. LNCS/LNAI.

Schmidt, J, Hapfelmeier, A, Müller, M, Pernetzky, R, Drzezga, A, Kurz, A, and Kramer, S (2010).
Interpreting PET Scans by Structured Patient Data: A Data Mining Case Study in Dementia Research
Journal of Knowledge and Information Systems (KAIS), 24:149-170.

Seeland, M, Girschick, T, Buchwald, F, and Kramer, S (2010).
Online Structural Graph Clustering using Frequent Subgraph Mining
In: Proceedings of the European Conference of Machine Learning and Principles and Practice of Knowledge Discovery in Databases, ed. by J.L. Balcazar, F. Bonchi, A.Gionis, M.Sebag, vol. 3, pp. 213-228.

Smialowski, P, Frishman, D, and Kramer, S (2010).
Pitfalls of Supervised Feature Selection
Bioinformatics, in press.

Wicker, J and Kramer, S (2010).
An Extensive Multi Label Analysis of the ToxCast Data Set
In: 18th European Symposium on Quantitative Structure-Activity Relationships.

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Selected Talks and Tutorials:

Invited Talk "Margin-Based Rule Learning on Graphs and Relations: Lessons Learned" at the French Machine Learning Conference CAP-2008
Invited Talk "Developing Data Mining Methods and Systems for Predictive Toxicology and Metabolic Prediction" at the 10th Annual International Workshop on Bioinformatics and Systems Biology (IBSB-2010), Kyoto, Japan, July 26, 2010.
Invited Talk "Learning Probabilistic Real-Time Automata from Multi-Attribute Event Logs" at the DyNaK Workshop at ECML/PKDD-2010, Barcelona, Spain, September 24, 2010.
Highlight Track Talk "Improving Structure Alignment Based Prediction of SCOP Families Using Vorolign Kernels" at ISMB/ECCB-2011, Vienna, Austria, July 17-19, 2011.
Invited Talk "Data Mining Methods for Cheminformatics" at the Moscow Conference on Computational Molecular Biology (MCCMB-2011), Moscow, Russia, July 21-24, 2011.
Tutorial "Advanced Data Mining for Bioinformatics" at the 12th International Conference on Intelligent Systems for Molecular Biology (ISMB-2004)/3rd European Conference on Computational Biology (ECCB-2004)
Tutorial "Mining Structured Data in Bioinformatics" at the 4th European Conference on Computational Biology (ECCB-2005)
Tutorial "Distances, Margins, Kernels: Machine Learning Concepts for Computational Biology" at the 16th International Conference on Intelligent Systems for Molecular Biology (ISMB-2008)

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